DefaultAssay(immune.combined) <- "RNA"
m0.markers <- FindConservedMarkers(immune.combined, ident.1 = 0, grouping.var = "stim", verbose = FALSE)
head(m0.markers)
LPBS_p_val LPBS_avg_logFC LPBS_pct.1 LPBS_pct.2 LPBS_p_val_adj XPBS_p_val
ENO1 7.453768e-14 -0.4029134 0.849 0.865 1.362102e-09 1.886974e-192
PGK1 3.751431e-19 -0.4890748 0.796 0.896 6.855364e-15 2.223616e-187
ALDOA 1.376251e-20 -0.4669688 0.915 0.943 2.514961e-16 7.331599e-149
LDHA 8.608986e-24 -0.6003426 0.954 0.968 1.573206e-19 1.240812e-148
TUBA1B 3.356650e-05 -0.5658022 0.711 0.740 6.133943e-01 3.339522e-99
GAPDH 1.576429e-36 -0.6100311 1.000 0.998 2.880766e-32 1.777102e-85
XPBS_avg_logFC XPBS_pct.1 XPBS_pct.2 XPBS_p_val_adj max_pval minimump_p_val
ENO1 -0.5327901 0.985 0.987 3.448256e-188 7.453768e-14 3.773947e-192
PGK1 -0.6611422 0.895 0.970 4.063436e-183 3.751431e-19 4.447232e-187
ALDOA -0.4734297 0.984 0.988 1.339776e-144 1.376251e-20 1.466320e-148
LDHA -0.4424467 0.999 0.997 2.267460e-144 8.608986e-24 2.481624e-148
TUBA1B -0.7259521 0.844 0.914 6.102643e-95 3.356650e-05 6.679045e-99
GAPDH -0.2600070 1.000 1.000 3.247477e-81 1.576429e-36 3.554205e-85
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file 'm0.markers.xls': Permission denied
文件正在使用。
关闭即可
