1.环境变量 boost cmake
git clone --recursive https://github.com/boostorg/boost
wget https://cmake.org/files/v3.12/cmake-3.12.1-Linux-x86_64.tar.gz
2.安装ExpansionHunter
git clone --recursive https://github.com/Illumina/ExpansionHunter
cd ExpansionHunter
mkdir build
cd build
cmake ..
make
cmake -DBOOST_ROOT=/path/to/boost/ ..
3.ExpansionHunter的用法
ExpansionHunter \
--bam bamlets/bamlet.bam \
--ref-fasta hg19_ref.fa \
--repeat-specs ../../repeat-specs/hg19/ \
--vcf output/bamlet.vcf \
--json output/bamlet.json \
--log output/bamlet.log \
--read-depth 30
